SNP Profiles matching LCT EEN 163 /D

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 Key

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_Input profile
GGAAACGGTTCCAGCCTTAAGGAACCGG
1._RUQ_180
__ACGGTTCCAGCCTT_GGAACCGG
2._LCT_EEN_49
GGAAACGGTTCCGGCCTTAAGGAACCGG
3._RUQ_1600
__AAGGTTCCGGCCTT_GGAACCGG
4._RUQ_178
__AAGGTTCCGGCCTT_GGAACCGG
5._LCT_EEN_283
GGAAAAGGTTCCGGCCTTAAGGACCCGG
6._LCT_EEN_52
GGAAAAGGTTCCGGCCTTAAGGAACCGG
7._LCT_EEN_223
GGAAAAGGTTCCGGCCTTAAGGAACCGG
8._LCT_EEN_142
GGAAAAGGTTCCGGCCTTAAGGAACCGG
9._LCT_EEN_217
GGAAAAGGTTCCGGCCTTAAGGAACCGG
10._LCT_EEN_57
GGAAACGGTTCCGGCCTTAAGGACCCGG
11._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
12._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
13._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
14._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
15._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
16._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
17._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
18._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
19._LCT_EEN_221
GGAAAAGGTTCCGGCCTTAAGGAACCGG
20._LCT_EEN_44_/S-9
GGAAAAGGTTCCGGCCTTAAGGAACCGG
21._LCT_EEN_65
GGAAAAGGTTCCGGCCTTAAGGACCCGG
22._RUQ_102
__ACGGTTCCGGCCTT_GGAACCGG
23._RUQ_1547
__ACGGTTCCGGCCTT_GGAACCGG
24._RUQ_156
__ACGGTTCCAGCCAT_AGAACCGG
25._LCT_EEN_232
GGAAAAGGTTCCGGCCTTAAGGACCCGG
26._LCT_EEN_231
GGAAAAGGTTCCGGCCTTAGGGAACCGG
27._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
28._LCT_EEN_282
GGAAAAGGTTCCGGCCTTAAGGACCCGG
29._LCT_EEN_376
GGAACCGGTTCCGGCCTTAAGGAACCGG
30._LCT_EEN_379
GGAACCGGTTCCGGCCTTAAGGAACCGG
31._LCT_EEN_280
GGAAACGGTTCCAGCCTTAAGGAACCGG
32._LCT_EEN_109_/S-102
GGAAAAGGTTCCGGCCTTAAGGAACCGG
33._LCT_EEN_32
CGAAAAGGTTCCAGCCTTAAGGAACCGG
34._LCT_EEN_327
GGAAAAGGTTCCGGCCTTAAGGACCCGG
35._LCT_EEN_37
GGAAACGGTTCCGGCCTTAAGGAACCGG
36._LCT_EEN_107
GGAAAAGGTTCCGGCCTTAGGGACCCGG
37._LCT_EEN_220
GGAAAAGGTTCCGGCCTTAAGGAACCGG
 1516171819202122232425262728
_Input profile
GGCCTTAATTCCCCCCTTTTCCAACTAA
1._RUQ_180
GGCCTT_TT_CCCCTT____AA
2._LCT_EEN_49
GGCCTTAAGTCCCCCCTTTTCCAACTAA
3._RUQ_1600
GGCCTT_TT_CCCCTT____AA
4._RUQ_178
GGCCTT_TT_CCCCTT____AA
5._LCT_EEN_283
GGCCTTAAGTCCCCCCTTTTCCAACTAA
6._LCT_EEN_52
GGCCTTAAGTCCCCCCTTTTCCAATTAA
7._LCT_EEN_223
GGCCTTAGGGCCCCCCTTTTCCAACTAA
8._LCT_EEN_142
GGCCTTAAGTCCCC-TTTTCCAATTAA
9._LCT_EEN_217
CGCCTTAAGGCCCC-TTTTCCAACTAA
10._LCT_EEN_57
GGCCTTAAGGCCCCCCTTTTCGAACTAA
11._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
12._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
13._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
14._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
15._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
16._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
17._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
18._LCT_EEN_280
GGCCCT_GG_CG_TTTTCGAACTAA
19._LCT_EEN_221
GGCCTTAAGGCCCC-TTTTCCAACCAA
20._LCT_EEN_44_/S-9
GGCCTTAAGTCCCCCGTTTTCCAATTAA
21._LCT_EEN_65
GGCCTTAAGTCCCCCCTTTTCCAATTAA
22._RUQ_102
GGCCTT_GT_CCGGTT____AA
23._RUQ_1547
GGCCTT_GG_CCCCTT____AA
24._RUQ_156
CGCCTT_GT_CC-TT____AA
25._LCT_EEN_232
GGCCTTGGTTCCCCCCTTTTCCAATTAA
26._LCT_EEN_231
GGCCTTAAGGCCCC-TTTTCCAACTAA
27._LCT_EEN_282
GGCCTTAAGGCCCC-TTTTCCAATTAA
28._LCT_EEN_282
GGCCTTAAGGCCCC-TTTTCCAATTAA
29._LCT_EEN_376
GGCCTTAAGGCCCCCCTTTTCGAATTAA
30._LCT_EEN_379
GGCCTTAAGGCCCCCCTTTTCGAATTAA
31._LCT_EEN_280
GGCCCTGGGG_CG_TTTTCGAACTAA
32._LCT_EEN_109_/S-102
CGCCTTAAGTCCCCCCTTTTCGAATTAA
33._LCT_EEN_32
GGCCCTAATTCCCCGGTTTTCCATTTAA
34._LCT_EEN_327
GGCCTTAAGGCCCC-TTTTCCAATTAA
35._LCT_EEN_37
GGCCTTAAGTCCCCGGTTTTCGAATTAA
36._LCT_EEN_107
CGCCTTAATTCCCCCCTTTTCCTTCTAA
37._LCT_EEN_220
GGCCTTAAGGCCCCCGTTTTCCAATTAA
 293031323334353637383940  
_Input profile
CCGGAATTGGTTACTTTTCCGGCCX_XX_X
1._RUQ_180
CC___GG___TTCCGG_X_XX_X
2._LCT_EEN_49
CCGGAATTGG-AA-TTCCGG-X_XX_X
3._RUQ_1600
CC___GG___TTCCGG_X_XX_X
4._RUQ_178
CC___GG___TTCCGG_X_XX_X
5._LCT_EEN_283
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
6._LCT_EEN_52
CCGGAATTGG-AA-TTCCGG-X_XX_X
7._LCT_EEN_223
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
8._LCT_EEN_142
CCGGAATTGGTTAATTCTCCGG-X_XX_X
9._LCT_EEN_217
CCGGAATTGGTTAATTTTCCGG-X_XX_X
10._LCT_EEN_57
CCGG-TTGGTTAATTTTCC-CCX_XX_X
11._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
12._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
13._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
14._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
15._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
16._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
17._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
18._LCT_EEN_280
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
19._LCT_EEN_221
CCGG-TTGGTTAATTTTCC-CCX_XX_X
20._LCT_EEN_44_/S-9
CCGGAATTGG-AA-TTCCGG-X_XX_X
21._LCT_EEN_65
CCGGAATTGG-AA-TTCCGG-X_XX_X
22._RUQ_102
CC___GG___TTCCGG_X_XX_X
23._RUQ_1547
CC___GG___CTCCGG_X_XX_X
24._RUQ_156
CC___GG___TTCCGG_X_XX_X
25._LCT_EEN_232
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
26._LCT_EEN_231
CCGGAATTGGTTAATTCTCCGGCCX_XX_X
27._LCT_EEN_282
CCGGAATTGGTTAATTTTCCGGCCX_XX_X
28._LCT_EEN_282
CCGGAATTGGTTAATTTTCCGG-X_XX_X
29._LCT_EEN_376
CCGG-TTGGTTAATTTTCC-CCX_XX_X
30._LCT_EEN_379
CCGG-TTGGTTAATTTTCC-CCX_XX_X
31._LCT_EEN_280
CCGGAATTGGTTACTTTTCCGGCCX_XX_X
32._LCT_EEN_109_/S-102
CCGGAATTGG-AA-TTCCGG-X_XX_X
33._LCT_EEN_32
CCGGAATTGG-AC-TTCCGG-X_XX_X
34._LCT_EEN_327
CCGG-TTGGTTAATTTTCC-CCX_XX_X
35._LCT_EEN_37
CCGGAATTGG-AA-TTCCGG-X_XX_X
36._LCT_EEN_107
CCGGAATTGGTTACCTTTCCGGCCX_XX_X
37._LCT_EEN_220
CCGGAATTGGTTAATTCTCCGGCCX_XX_X

Input profile: LCT_EEN_163_/D

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 104 T1
 Dapeng Zhang, 2014

1._LCT_EEN_163_/D RUQ_180

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_49

95.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

3._AMAZ_11 RUQ_1600

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LCT_EEN_163_/A RUQ_178

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._LCT_EEN_283

93.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 18 T1
 Dapeng Zhang, 2014

6._LCT_EEN_52

93.2 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

7._LCT_EEN_223

92.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

8._LCT_EEN_142

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

9._LCT_EEN_217

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

10._LCT_EEN_57

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

11._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 9 > FP
 Dapeng Zhang, 2016

12._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 6 > FP
 Dapeng Zhang, 2016

13._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 2 > FP
 Dapeng Zhang, 2016

14._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 1 > FP
 Dapeng Zhang, 2016

15._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 11
 Dapeng Zhang, 2016

16._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 10
 Dapeng Zhang, 2016

17._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 7
 Dapeng Zhang, 2016

18._LCT_EEN_280

91.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8192 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._LCT_EEN_221

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

20._LCT_EEN_44_/S-9

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 146 T2
 Dapeng Zhang, 2014

21._LCT_EEN_65

91.9 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

22._COCA_3308_/1_[CHA] RUQ_102

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._NAPO_25_[CHA] RUQ_1547

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._LCT_EEN_37_/I RUQ_156

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._LCT_EEN_232

91.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

26._LCT_EEN_231

91 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

27._LCT_EEN_282

91 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

28._LCT_EEN_282

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

29._LCT_EEN_376

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

30._LCT_EEN_379

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

31._LCT_EEN_280

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A144 T1
 Dapeng Zhang, 2016

32._LCT_EEN_109_/S-102

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 137 T1
 Dapeng Zhang, 2014

33._LCT_EEN_32

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

34._LCT_EEN_327

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 61 T1
 Dapeng Zhang, 2014

35._LCT_EEN_37

90.5 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

36._LCT_EEN_107

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

37._LCT_EEN_220

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520